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How to use igv Videos
- 1. Using IGV Browser for Variants and Next Generation Sequencing (Part 1)
- 2. Analyzing Public Datasets 5: Introduction to IGV (cDNA)
- 3. Viewing Tumor/Normal Sequencing Data in BaseSpace Using the Broad IGV
- 4. Using IGV Browser for Variants and Next Generation Sequencing (Part 2)
- 5. Loading the Tumor/Normal Sequencing Data into the Broad IGV
- 6. Using IGV through GenePattern (v2)
- 7. Analyzing Public Datasets 7: An Introduction to IGV (genomic)
Using IGV Browser for Variants and Next Generation Sequencing (Part 1)
This video demonstrates how to use IGV browser for a custom genome and dataset, how to use the launch tool, how to import a genome and annotations, and ...
User Comments
Saeid Kadkhodaei
commented
on 16 Nov 2015
Many thanks Mariam.
Analyzing Public Datasets 5: Introduction to IGV (cDNA)
This video is an introduction to using the genome browser called "Integrative Genomics Viewer (IGV)". Using BAM and BAI files generated in video #4 we learn ...
User Comments
Serena.F
commented
on 25 Sep 2015
Great tutorials! If you are using the human genome as the reference genome,
is it best to upload the same genome that you have used in your previous
alignment or can you just use the one that IGV provides?
Pete Kim
commented
on 12 Jul 2015
I really appreciate your tutorials! =)
Viewing Tumor/Normal Sequencing Data in BaseSpace Using the Broad IGV
This video shows how to use IGV to visualize variants identified by the Cancer Sequencing Workflow between the Tumor and Normal samples. Here we ...
Using IGV Browser for Variants and Next Generation Sequencing (Part 2)
This video demonstrates how to use IGV browser for a custom genome and dataset, how to use the launch tool, how to import a genome and annotations, and ...
Loading the Tumor/Normal Sequencing Data into the Broad IGV
This video shows how to load the Tumor/Normal Sequencing Project dataset into the Broad IGV, how to load the files within this project for visualization, and ...
Using IGV through GenePattern (v2)
This tutorial will introduce users to launching IGV from GenePattern and some of the basic IGV functionality.
Analyzing Public Datasets 7: An Introduction to IGV (genomic)
This video is is the second part of our introduction to IGV. In this video we compare two RNA-seq datasets that were aligned to genomic DNA and take a look at ...
User Comments
Febeleh
commented
on 21 Oct 2012
LMAOROTFLBTCSTCNDBFOOTWIFOAGWLLBGWTHROOTSAIAKBAYB
Pete Kim
commented
on 12 Jul 2015
Thank you David!! helpful! =)
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